Elsewhere, Forest Whitaker won the Best Actor prize for Last King of Scotland, Little Miss Sunshine star Alan Arkin won Best Supporting Actor and Jennifer Hudson won Best Supporting Actress for her role in Dreamgirls.
The ceremony took place at the Royal Opera House in London's Covent Garden.
The full list of winners is as follows:
The Academy Fellowship: Anne V. Coates
Film: The Queen
The Michael Balcon Award for Outstanding British Contribution to Cinema: Nick Daubeny
The Alexander Korda Award for the Outstanding British Film of the Year: Last King of Scotland
The Carl Foreman Award for Special Achievement by a British Director, Writer or Producer in Their First Feature Film: Andrea Arnold, Red Road
The David Lean Award for Achievement in Direction: United 93, Paul Greengrass
Original Screenplay: Little Miss Sunshine, Michael Arndt
Adapted Screenplay: Last King of Scotland, Peter Morgan/Jeremy Brock
Film Not in the English Language: Pan's Labyrinth
Animated Feature Film: Happy Feet
Actor in a Leading Role: Forest Whitaker, Last King of Scotland
Actress in a Leading Role: Helen Mirren, The Queen
Actor in a Supporting Role: Alan Arkin, Little Miss Sunshine
Actress in a Supporting Role: Jennifer Hudson, Dreamgirls
The Anthony Asquith Award for Achievement in Film Music: Babel, Gustavo Santaolalla
Cinematography: Children of Men, Emmanuel Lubezki
Editing: United 93, Clare Douglas/Christopher Rouse/Richard Pearson
Production Design: Children of Men, Jim Clay/Geoffrey Kirkland/Jennifer Williams
Costume Design: Pan's Labyrinth, Lala Huete
Sound: Casino Royale, Chris Munro/Eddy Joseph/Mike Prestwood Smith/Martin Cantwell/Mark Taylor
Achievement in Special Visual Effects: Pirates of the Caribbean: Dead Man's Chest, John Knoll/Hal Hickel/Charles Gibson/Allen L. Hall
Makeup & Hair: Pan's Labyrinth, Jose Quetglas/Blanca Sanchez
Short Animation Film: Guy 101, Ian Gouldstone
Short Film: Do Not Erase, Asitha Ameresekere
The Orange Rising Star Award: Eva Green
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